Master index
| Master index |
Index for .\src |
 Contents | - automatically generated list of SOS m-files |
| NaNArray | - helper function to generate an empty array |
| calculateOverlap_Dialog | - calculate overlap dialog |
| create2samplettest_Dialog | - create 2-sample t-test dialog |
| createHardBoundConstraint_Dialog | - create hard bound constraint dialog |
| createMatchCorrelztest_Dialog | - create correlation-matching z-test dialog |
| createMatchUniformkstest_Dialog | - create uniformity ks-test dialog |
| createPlots_Dialog | - create sosplots dialog |
| createPop_Dialog | - create population dialog |
| createSOS_dialog | - create SOS optimizer dialog |
| createSample_Dialog | - create sample dialog |
| createSingleSampleSoftDistanceConstraint_Dialog | - create single sample soft distance constraint dialog |
| createSoftEntropyConstraint_Dialog | - create soft entropy constraint dialog |
| createSoftMatchCorrelDistanceConstraint_Dialog | - create soft match correlation constraint dialog |
| createSoftMetaConstraint_Dialog | - create soft meta-constraint dialog |
| createTwoSampleSoftDistanceConstraint_Dialog | - create two sample soft distance constraint dialog |
| createsinglesamplettest_Dialog | - create single sample t-test dialog |
| dataFrame | - dataframe object |
| expAnneal | - exponentially-decaying temperature annealing object |
| expAnneal_Dialog | - create expAnneal dialog |
| genericAnneal | - abstract interface for annealing objects |
| genericConstraint | - parent class for constraints |
| genericFeederCandidateSelection | - parent class for replacement selection objects |
| genericPopulationCandidateSelection | - parent class for replacement item selection |
| genericSampleCandidateSelection | - generic method for sample selection objects |
| genericStatTest | - parent class for statistical test objects |
| genericpSwapFunction | - parent class for swap probability objects |
| getPopupMenuName | - retrieves the popup menu name in the GUI |
| getdfName | - extracts a dataframe name selected in the GUI |
| greedyAnneal | - greedy annealing (i.e., T = 0) object |
| hardBoundConstraint | - hard bound constraint object |
| hardConstraint | - parent class for hard constraints |
| initVerbosePrint | - initializes the flags which control the verbosity of output |
| logisticpSwapFunction | - swap function based on the logistic curve |
| maxpDecrease_Dialog | dialog used for calculating the largest p-decrease value |
| nullArray | - helper function to generate a null array |
| numSteps_Dialog | dialog used to calculate the nubmer of temperature-lowering steps |
| openDoors | - tries to open the pod bay doors |
| plt | - plt package by Paul Mennen |
| population | - population object |
| randPopulationAndSampleCandidateSelection | - random population and sample selection method for swaps |
| randPopulationCandidateSelection | - random population selection method for selecting swaps |
| randSampleCandidateSelection | - random sample method for selecting swaps |
| sample | - sample object |
| saveHistory_Dialog | - dialog used to save the optimization history |
| seconds2human | - human readable time output |
| setBufferedHistoryOutfile_Dialog | - dialog for setting output file for buffered history output |
| setSeed | - function for setting the seed for the random number generator |
| setSeed_Dialog | - dialog for setting the random seed |
| setVerbosePrintVerbosity | - function for setting the verbosity of the SOS software cmd line output |
| setVerbosity | - function for setting the verbosity for specific types of output |
| softConstraint | - parent class for soft constraints |
| softDistanceConstraint | - parent class for soft distance constraints |
| softEntropyConstraint | - soft entropy constraint object |
| softMatchCorrelConstraint | - soft correlation matching constraint object |
| softMetaConstraint | - parent class for soft meta-constraints |
| sos | - SOS optimization object |
| sosCorrelTest | - test for equivalence of two correlations |
| sosHistory | - object for storing the detailed history of an optimization |
| sosPlots | - object used to create detailed plots of SOS optimization |
| sos_gui | - sos main GUI |
| soskstest | - object for testing normality using a Kolmogorov-Smirnov test |
| sosttest | - object for creating t-tests |
| validFileName | - helper function to validate that a string represents a valid file name |
| validFileNameOrNull | - helper function to validate that a string represents a valid file name or null |
| validLogical | - helper function to validate that a string represents a logical operator |
| validString | - helper function to validate that a variable represents a valid string |
| validStringOrNull | - helper function to validate that a string represents a valid string or null |
| validateCorrel | - helper function to validate that a string represents a correlation |
| validatePositiveInteger | - helper function to validate that a string represents a positive integer |
| validateProbability | - helper function to validate that a string represents a probability |
| validateRealNumber | - helper function to validate that a string represents a real number |
| verbosePrint | - master print function that regulates cmd line output based on verbosity flags |