initVerbosePrint

 - initializes the flags which control the verbosity of output

 copyright 2009-2012 Blair Armstrong, Christine Watson, David Plaut

    This file is part of SOS

    SOS is free software: you can redistribute it and/or modify
    it for academic and non-commercial purposes
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.  For commercial or for-profit
    uses, please contact the authors (sos@cnbc.cmu.edu).

    SOS is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

0001 % - initializes the flags which control the verbosity of output
0002 %
0003 % copyright 2009-2012 Blair Armstrong, Christine Watson, David Plaut
0004 %
0005 %    This file is part of SOS
0006 %
0007 %    SOS is free software: you can redistribute it and/or modify
0008 %    it for academic and non-commercial purposes
0009 %    under the terms of the GNU General Public License as published by
0010 %    the Free Software Foundation, either version 3 of the License, or
0011 %    (at your option) any later version.  For commercial or for-profit
0012 %    uses, please contact the authors (sos@cnbc.cmu.edu).
0013 %
0014 %    SOS is distributed in the hope that it will be useful,
0015 %    but WITHOUT ANY WARRANTY; without even the implied warranty of
0016 %    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
0017 %    GNU General Public License for more details.
0018 
0019 %    You should have received a copy of the GNU General Public License
0020 %    along with SOS (see COPYING.txt).
0021 %    If not, see <http://www.gnu.org/licenses/>.
0022 
0023 
0024 
0025 function  initVerbosePrint()
0026     %% initializes the verbose printing parameters
0027     % the idea is that different verbosity flags could allow for different
0028     % styles of output, though currently flags are always ==1 and this
0029     % outputs to stdout
0030     %
0031     % each parameter indicates a specific print function, so it is possible
0032     % to suppress or activate individual messages to create a custom level
0033     % of verbosity.
0034     
0035     global verbosityFlags;
0036     
0037     if(isempty(verbosityFlags))
0038         verbosityFlags = struct( ...
0039             'setSeed_set',1,...
0040             'population_constructor_startObjCreation',1, ...
0041             'population_constructor_fileExists',1,...
0042             'population_constructor_endObjCreation',1, ...
0043         ...
0044             'sample_constructor_startObjCreation',1, ...
0045             'sample_constructor_fileExists',1,...
0046             'sample_constructor_endObjCreation', 1, ...
0047             'sample_setPop_end',1,...
0048             'sample_lockAll_end',1,...
0049             'sample_unlockAll_end',1,...
0050         ...
0051             'dataFrame_readDataFrameData_reading',1, ...
0052             'dataFrame_readDataFrameData_HeaderPresent',1, ...
0053             'dataFrame_readDataFrameData_FormattingPresent',1, ...
0054             'dataFrame_readDataFrameData_DoneReadingData',1, ...
0055             'dataFrame_readDataFrameData_HeaderAbsent',1, ...
0056             'dataFrame_readDataFrameData_FormattingAbsent',1, ...
0057             'dataFrame_writeData_done',1,...
0058             'dataFrame_overlap_percent',1,...
0059         ...
0060             'sos_constructor_startObjCreation',1, ...
0061             'sos_constructor_endObjCreation', 1, ...
0062             'sos_parseConstructor_defaultMaxIt',1, ...
0063             'sos_parseConstructor_pSwapFunction',1,...
0064             'sos_parseConstructor_targSampleCandSelectMethod',1,...
0065             'sos_parseConstructor_feederdfCandSelectMethod',1,...
0066             'sos_parseConstructor_reportInterval',1,...
0067             'sos_parseConstructor_stopFreezeIt',1,...
0068             'sos_parseConstructor_statReports',1,...
0069             'sos_addSample_NoPopForSampleWarn',1, ...
0070             'sos_addSample_SampleAlreadyAddedWarn',1, ...
0071             'sos_addSample_sampleAdded',1, ...
0072             'sos_initFillSamples_start',1,...
0073             'sos_normalizeData_start',1, ...
0074             'sos_normalizeData_noVarWarn',1,...
0075             'sos_initCost_startInit',1,...
0076             'sos_initCost_indivHardCost',1,...
0077             'sos_initCost_totalHardCost',1,...
0078             'sos_initCost_indivSoftCost',1,...
0079             'sos_initCost_totalSoftCost',1,...
0080             'sos_initCost_indivMetaCost',1,...
0081             'sos_initCost_totalMetaCost',1,...
0082             'sos_initCost_totalSoftMetaCost',1,... 
0083             'sos_dispCost_start',1,...
0084             'sos_dispCost_indivHardCost',1,...
0085             'sos_dispCost_totalHardCost',1,...
0086             'sos_dispCost_indivSoftCost',1,...
0087             'sos_dispCost_totalSoftCost',1,...
0088             'sos_dispCost_indivMetaCost',1,...
0089             'sos_dispCost_totalMetaCost',1,...
0090             'sos_dispCost_totalSoftMetaCost',1,...
0091             'sos_dispCost_warnCostNaN',1,...
0092             'sos_optimize_begin',1,...
0093             'sos_optimize_startOptimization',1,...
0094             'sos_optimize_resetFreezeIt',1,...
0095             'sos_optimize_reportHeader',1,...
0096             'sos_optimize_report',1,...
0097             'sos_optimize_endMaxIt',1,...
0098             'sos_optimize_endstopFreezeIt',1,...
0099             'sos_optimize_endallStatsPass',1,...
0100             'sos_optimize_endUserGuiInterrupt',1,...
0101             'sos_setAnnealSchedule_defaultAnneal',1,...
0102             'sos_writeSamples_begin',1, ...
0103             'sos_writePopulations_begin',1,...
0104             'sos_addttest_end',1,...
0105             'sos_addztest_end',1,...
0106             'sos_addkstest_end',1,...
0107             'sos_doStatTests_begin',1,...
0108             'sos_deltaCostPercentiles_Header',1,...
0109             'sos_deltaCostPercentiles_Scores',1,...
0110             'sos_deltaCostPercentiles_deltaCost95',1,...
0111             'sos_createHistory_alreadyCreated',1,...
0112             'sos_createPlots_alreadyCreated',1,...
0113         ...
0114             'hardBoundConstraint_Constructor_endObjCreation',1, ...
0115             'hardBoundConstraint_initCost',1, ...
0116         ...
0117             'softDistanceConstraint_Constructor_endObjCreation',1,...
0118         ...
0119             'softEntropyConstraint_Constructor_endObjCreation',1,...
0120         ...
0121             'softMatchCorrelConstraint_Constructor_endObjCreation',1,...
0122         ...
0123             'softMetaConstraint_Constructor_endObjCreation',1,...
0124         ...
0125             'randSampleCandidateSelection_const',1, ...
0126         ...
0127             'randPopulationCandidateSelection_const',1, ...
0128         ...
0129             'randPopulationAndSampleCandidateSelection_const',1, ...
0130         ...
0131             'greedyAnneal_constructor_startObjCreation',1,...
0132         ...
0133             'expAnneal_constructor_startObjCreation',1, ...
0134             'expAnneal_anneal_calibration',1, ...
0135             'expAnneal_anneal_dropTemp',1,... 
0136             'expAnneal_anneal_pthermalEquil',1, ...
0137             'expAnneal_numSteps_nStep',1,...
0138             'expAnneal_numSteps_Warn',1,...
0139             'expAnneal_maxpDecrease_maxpDecrease',1,...
0140         ...
0141             'sosttest_ruIndependentSamplettest',1, ... 
0142             'sosttest_runPairedSamplettest',1, ...
0143             'sosttest_runSingleSamplettest',1, ...
0144         ...
0145              'sosCorrelTest_runMatchCorrelztest',1,...
0146         ...
0147              'soskstest_runMatchUniformkstest',1,...
0148         ...
0149             'sosHistory_constructor_end',1,...
0150             'sosHistory_bufferedHistoryWrite_end',1, ...
0151             'sosHistory_enableBufferedHistoryWrite_end',1,...
0152             'sosHistory_disableBufferedHistoryWrite_end',1, ...
0153             'sosHistory_writeHistory_begin',1, ...
0154         ... 
0155             'sosPlots_constructor_end',1, ...
0156         ...    
0157         ...
0158         ... % GUI COMMAND OUTPUTS
0159             'sos_gui_runScript_CallBack_runScript',1, ...
0160             'sos_gui_cmdWindow_CallBack_runcmd',1, ...
0161             'sosGui_writeDF',1, ...
0162             'sosGui_links2p',1, ...
0163             'sosGui_simpleCmd',1,...
0164             'sosGui_addSample',1, ...
0165             'sosGui_setFeederdfCandMethod',1, ...
0166             'sosGui_initFillSamples',1, ...
0167             'sosGui_normalizeData',1,...
0168             'sosGui_setgreedyAnneal',1,...
0169             'sosGui_greedyAnneal',1,...
0170             'sosGui_initCost',1,...
0171             'sosGui_doStats',1,...
0172             'sosGui_createHistory',1,...
0173             'sosGui_enableBufferedHistory',1,...
0174             'sosGui_disableBufferedHistory',1,...
0175             'sosGui_dispCost',1,...
0176             'sosGui_deltaCostDeciles',1,...
0177             'sosGui_writeSamples',1,...
0178             'sosGui_writePopulations',1,...
0179             'sosGui_writeAll',1,...
0180             'sosGui_optimize',1,...
0181         ...
0182             'setSeed_Dialog_Set',1, ...
0183         ... 
0184             'createPop_Dialog_Create',1, ...
0185         ...
0186             'createSample_Dialog_Create',1, ...
0187         ...
0188             'calculateOverlapDialog_calculateOverlap',1, ...
0189         ...
0190             'createSOSDialog_createSOS', 1, ...
0191         ...
0192             'expAnneal_Dialog_createExpAnneal',1, ...
0193         ...
0194             'numSteps_Dialog_calculate',1, ...
0195         ...
0196             'maxpDecrease_Dialog_calculate',1, ...
0197         ...
0198             'createHardBoundConstraint_Dialog_create',1, ...
0199         ...
0200             'createSingleSampleSoftDistanceConstraint_Dialog_create',1, ...
0201         ...
0202             'createTwoSampleSoftDistanceConstraint_Dialog_create',1, ...
0203         ... 
0204             'createSoftMatchCorrelConstraint_Dialog_create',1,...
0205         ...
0206             'createSoftEntropyConstraint_Dialog_create',1, ...
0207         ...
0208             'createSoftMetaConstraint_Dialog_create',1, ...
0209         ...
0210             'createsinglesamplettest_Dialog_create',1, ...
0211         ...
0212             'create2samplettest_Dialog_create',1, ...
0213         ...
0214             'createMatchCorrelztest_Dialog_create',1,...
0215         ...
0216             'createMatchUniformkstest_Dialog_create',1,...
0217         ...
0218             'setBufferedHistoryOutfile_Dialog_create',1, ...
0219         ...
0220             'saveHistory_Dialog_save',1, ...
0221         ...
0222             'createPlots_Dialog_create',1 ...
0223             );
0224     end;
0225 
0226 
0227 end
0228